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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5647190_5647693_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5647190 - 5647693
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATCACCGTATGT
Flanking Amino Acid:
DTIVRWSAAKGIGRITGRLP
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
73.2
39.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
87.8
0.85
0.6
81.8
30.3
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
42.7
-0.4
2.4
62.55
47.3

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102