About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5656707_5657137_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5656707 - 5657137
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGATAGTGAATT
Flanking Amino Acid:
TQQDRSDSPTSINVTDEDSH
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
46.4
-0.1
2.2
67.84
42.6

Associated Gene:

Gene:
ZNF750
Ensembl Gene ID:
ENSAPLG00000011661
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012130
5655989 - 5658564
2576