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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5678324_5687346_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5678324 - 5687346
Intron Length:
9023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATCAATA
Flanking Amino Acid:
ELIPFINQISSALVIAAVFD
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
86
0.81
0.7
85
29.6
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
49.5
-0
1.9
67.29
38.6

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102