Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5695742_5699564_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5695742 - 5699564

Intron Length:

3823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATCAT

U12 Branch Point Sequence:

TTCTCTATCATA

Flanking Amino Acid:

GNRVNCYLTISVYIAGFPEY

Intron Amino Acid Position:

555

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

75.9

0.64

1.1

77.7

35.2

Major PPT

93.6

0.98

0.6

92.4

17.8

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

49.6

-0

67.44

39.9

Associated Gene:

Gene:

TBCD

Ensembl Gene ID:

ENSAPLG00000010791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011355

5623209 - 5728310

105102