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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5699646_5700378_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5699646 - 5700378
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTACATCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GCTTTTTTACAT
Flanking Amino Acid:
LVNMKINHWDSVIRELATKA
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.7
0.71
0.8
78.4
34.9
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
52.6
0.16
1.7
68.86
42.4

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102