About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5700453_5701042_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5700453 - 5701042
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TAATCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTATTTAATC
Flanking Amino Acid:
PRAPEYMANVVLPRLLPLSV
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.3
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.9
0.7
0.9
77.9
35.9
Minor 5ss
34.2
-1.8
3
36.5
40.9
Minor BPS
66.1
0.48
1.4
70.97
33.8

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102