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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5701161_5702588_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5701161 - 5702588
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAAATG
5'SS Class:
major
3'SS Sequence:
TATACCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATCTCTTAAAT
Flanking Amino Acid:
ALCKLAEENNRSVTYYFNEK
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
70.5
39.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80
0.68
0.9
72.9
37
Minor 5ss
42.5
-0.8
3
57.1
47.2
Minor BPS
67.7
0.63
1.4
78.58
36.6

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102