About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5711513_5713669_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5711513 - 5713669
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATCT
Flanking Amino Acid:
GLGGELMRPAVCTLIEKLSL
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
61.6
0.44
1.8
80.6
41.4

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102