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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5713733_5714150_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5713733 - 5714150
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
CTTACTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
TATTCCTTACTG
Flanking Amino Acid:
KMPFRGDPIIGGWQWLINDS
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
79.8
0.67
0.9
76.6
37.4
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
69.2
0.46
1.7
72.44
40.6

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102