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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5716017_5718952_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5716017 - 5718952
Intron Length:
2936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATAATG
5'SS Class:
major
3'SS Sequence:
GTATTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCGCTTTTCACT
Flanking Amino Acid:
EKGEADPALQDELVTRYISG
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
68.3
42.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.6
0.71
0.8
77.4
36.7
Minor 5ss
36.7
-1.5
3
41.5
44.7
Minor BPS
51.4
0.12
1.8
68
43.5

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102