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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5725291_5726666_F

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5725291 - 5726666
Intron Length:
1376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGCTAC
5'SS Class:
weak_major
3'SS Sequence:
CTCTTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
TATTACGTGATG
Flanking Amino Acid:
QNEAELINANICKQIMCWLA
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
64
36.9
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
84.4
0.77
0.7
80.6
24.7
Minor 5ss
59.4
0.32
2.3
71.4
39.3
Minor BPS
47.7
-0.3
2.2
60.17
42

Associated Gene:

Gene:
TBCD
Ensembl Gene ID:
ENSAPLG00000010791
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011355
5623209 - 5728310
105102