Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5726826_5728105_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5726826 - 5728105

Intron Length:

1280

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATACAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CACATTTTAATT

Flanking Amino Acid:

HREELERIFPRSETETLNWN

Intron Amino Acid Position:

953

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

73.5

37.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.1

0.74

0.7

76.4

32.2

Minor 5ss

33.7

-1.9

3.2

47.5

Minor BPS

57.3

0.31

1.3

64.56

40.8

Associated Gene:

Gene:

TBCD

Ensembl Gene ID:

ENSAPLG00000010791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011355

5623209 - 5728310

105102