Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5758059_5767898_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5758059 - 5767898

Intron Length:

9840

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCCAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTTGCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGAAA

U12 Branch Point Sequence:

ATGGTATGAAAG

Flanking Amino Acid:

RSLSPANRKKVTAFCDVDEK

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

77.9

38.6

Major BPS

57.6

0.19

1.3

67.9

36.3

Major PPT

0.7

0.9

76.2

37.8

Minor 5ss

39.5

-1.2

3.2

55.8

48.4

Minor BPS

42.1

-0.7

1.8

44.75

Associated Gene:

Gene:

B3GNTL1

Ensembl Gene ID:

ENSAPLG00000010702

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011164

5755599 - 5871700

116102

ENSAPLT00000043019

5750130 - 5786048

35919