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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5836370_5850951_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5836370 - 5850951
Intron Length:
14582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CATTTTGCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTCATTTCATT
Flanking Amino Acid:
YEAAIQHPNSIVGCQVRREP
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.4
0.48
0.9
69.8
36.3
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
49.1
0.01
1.9
70.98
40.2

Associated Gene:

Gene:
B3GNTL1
Ensembl Gene ID:
ENSAPLG00000010702
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011164
5755599 - 5871700
116102