Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_584160_586247_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

584160 - 586247

Intron Length:

2088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

ATTTCTTTCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTTAT

U12 Branch Point Sequence:

ATTTCTGTATTT

Flanking Amino Acid:

EEILGKITLATVKALNHLKE

Intron Amino Acid Position:

222

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

80.3

34.1

Major BPS

82.6

0.81

0.8

71.7

Major PPT

80.3

0.68

0.8

73.8

36.2

Minor 5ss

39.1

-1.2

3.1

61.3

Minor BPS

0.14

2.2

77.64

39.7

Associated Gene:

Gene:

MAP2K4

Ensembl Gene ID:

ENSAPLG00000013074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039429

546724 - 608442

61719

ENSAPLT00000013644

546724 - 608862

62139