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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5861547_5867003_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5861547 - 5867003
Intron Length:
5457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTCTCAACA
Flanking Amino Acid:
GSNNSSQPRGVGFAKNQAVI
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.9
0.65
0.9
74.7
34.3
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
73.7
0.74
1.4
81.94
32.6

Associated Gene:

Gene:
B3GNTL1
Ensembl Gene ID:
ENSAPLG00000010702
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011164
5755599 - 5871700
116102