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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5867346_5871658_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5867346 - 5871658
Intron Length:
4313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGCTCGGC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGTTACTGACTT
Flanking Amino Acid:
GAGGRSVAAPSVIVPVHNSE
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.09
1.1
41.8
39.6
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
30.7
-2.2
3.5
40.8
45.8
Minor BPS
51.6
0.13
1.9
74.83
41.8

Associated Gene:

Gene:
B3GNTL1
Ensembl Gene ID:
ENSAPLG00000010702
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011164
5755599 - 5871700
116102