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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5888051_5893900_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5888051 - 5893900
Intron Length:
5850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
ATTTGCCTAACT
Flanking Amino Acid:
YSSDLCNWKGSGLTHESHKK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
64
0.52
2.1
87.36
37.9

Associated Gene:

Gene:
METRNL
Ensembl Gene ID:
ENSAPLG00000010666
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011105
5887938 - 5911659
23722