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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5894290_5910558_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5894290 - 5910558
Intron Length:
16269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTTTGATCC
Flanking Amino Acid:
GIASDLHTVSAPCRPCSDTE
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.9
0.78
0.7
76.8
31.9
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
52.7
0.07
1.7
66.16
40

Associated Gene:

Gene:
METRNL
Ensembl Gene ID:
ENSAPLG00000010666
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011105
5887938 - 5911659
23722