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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_5910619_5911342_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5910619 - 5911342
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCTTCCTCATGT
Flanking Amino Acid:
VLLAVCTSDFVIRGSIRDVT
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
83.8
0.76
0.8
76.4
37.6
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
48.2
-0
2.1
67.57
48.9

Associated Gene:

Gene:
METRNL
Ensembl Gene ID:
ENSAPLG00000010666
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011105
5887938 - 5911659
23722