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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6017587_6018028_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6017587 - 6018028
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAA
U12 Branch Point Sequence:
TTTTCTTGGACA
Flanking Amino Acid:
SPLQENRNNQVSAHWSVEEI
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
65.6
0.39
0.9
67.3
29.6
Major PPT
77.7
0.62
1
76
38
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
72.7
0.71
1.4
83.14
30.7

Associated Gene:

Gene:
KPNA2
Ensembl Gene ID:
ENSAPLG00000010252
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010714
6017277 - 6022283
5007