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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6018118_6018897_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6018118 - 6018897
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTGCACACAAAA
Flanking Amino Acid:
ELQLQATQAARKLLSREKQP
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
75.8
0.58
0.8
74.2
31
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
40.3
-0.7
1.9
48.82
40.9

Associated Gene:

Gene:
KPNA2
Ensembl Gene ID:
ENSAPLG00000010252
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010714
6017277 - 6022283
5007