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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6019167_6020291_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6019167 - 6020291
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAT
U12 Branch Point Sequence:
TATCCCTTAACT
Flanking Amino Acid:
QAVWALGNIAGDGSTYRDLV
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
66.2
0.4
1.3
57.4
49.1
Major PPT
88.2
0.86
0.6
88.7
20.6
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
87.3
1.25
1
95.36
30.1

Associated Gene:

Gene:
KPNA2
Ensembl Gene ID:
ENSAPLG00000010252
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010714
6017277 - 6022283
5007