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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6020387_6020481_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6020387 - 6020481
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TCAACTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTATTTCAACT
Flanking Amino Acid:
LAVPDLSSLASGYLRNVTWT
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
76
0.59
0.9
69.4
36.4
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
66.7
0.6
1.5
84.53
36

Associated Gene:

Gene:
KPNA2
Ensembl Gene ID:
ENSAPLG00000010252
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010714
6017277 - 6022283
5007