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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6020746_6021333_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6020746 - 6021333
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
ACATCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCATTTTTAATT
Flanking Amino Acid:
LLGCSELPIVTPSLRAIGNI
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.2
0.52
1
69.4
40.9
Minor 5ss
45.7
-0.5
2.9
61.3
44.6
Minor BPS
65.8
0.57
1.2
71.31
40.8

Associated Gene:

Gene:
KPNA2
Ensembl Gene ID:
ENSAPLG00000010252
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010714
6017277 - 6022283
5007