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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6021833_6021934_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6021833 - 6021934
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTATGCTTATCC
Flanking Amino Acid:
ILDAISNIFLAAEKINETEK
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.4
38.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.5
0.75
0.8
77.8
30.7
Minor 5ss
41.3
-1
2.5
48.1
42.7
Minor BPS
60.8
0.32
2
75.19
41.3

Associated Gene:

Gene:
KPNA2
Ensembl Gene ID:
ENSAPLG00000010252
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010714
6017277 - 6022283
5007