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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6022085_6022190_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6022085 - 6022190
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GCTCTTTCAATT
Flanking Amino Acid:
TLIEKYFSAEEEEDQNVVPE
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
69.9
41.1
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
87.7
0.85
0.6
81.2
30.8
Minor 5ss
36.3
-1.6
2.9
45
36.8
Minor BPS
51.7
0.13
1.5
65.62
39.6

Associated Gene:

Gene:
KPNA2
Ensembl Gene ID:
ENSAPLG00000010252
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010714
6017277 - 6022283
5007