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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6066978_6075229_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6066978 - 6075229
Intron Length:
8252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TCACGTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TATTCTTCACGT
Flanking Amino Acid:
LDPKWNQHYDLYIGKSDSIT
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.2
60.4
44.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
79.4
0.66
0.9
76.3
37.4
Minor 5ss
35.9
-1.6
3.6
58
46.6
Minor BPS
49.2
0.02
2.1
73.01
44

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029