Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_607240_608328_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

607240 - 608328

Intron Length:

1089

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TATCTGATTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

GTTTCTCTATCT

Flanking Amino Acid:

SKRPKYKELLKHPFILMYEE

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

72.9

31.3

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

76.2

0.59

66.6

43.6

Minor 5ss

27.7

-2.6

29.3

Minor BPS

58.8

0.35

1.9

81.48

Associated Gene:

Gene:

MAP2K4

Ensembl Gene ID:

ENSAPLG00000013074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039429

546724 - 608442

61719

ENSAPLT00000013644

546724 - 608862

62139