Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6075364_6076549_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6075364 - 6076549

Intron Length:

1186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTAAG

5'SS Class:

major

3'SS Sequence:

CTTTGTTCTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

TGATTTATACTT

Flanking Amino Acid:

NAINRLKDTGYQRLDLCKLG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

1.1

72.7

38.2

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

81.6

0.71

0.8

76.6

32.2

Minor 5ss

37.6

-1.4

2.8

48.4

41.7

Minor BPS

47.3

-0.1

1.8

65.65

39.4

Associated Gene:

Gene:

SMURF2

Ensembl Gene ID:

ENSAPLG00000009867

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010322

6065234 - 6098262

33029