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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6076616_6080091_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6076616 - 6080091
Intron Length:
3476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTATCTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATATCTTTAATA
Flanking Amino Acid:
DNDTVRGQIVVSLQSRDRIG
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.3
0.48
0.9
67
38.6
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
77.7
0.87
1
78.52
31.5

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029