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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6080168_6082832_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6080168 - 6082832
Intron Length:
2665

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTT|GCCAGATGG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCCCAACA
Flanking Amino Acid:
VDCSRLFDNDLPASEYSSPG
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.3
0.05
1.4
44.4
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.3
0.73
0.8
78.5
28.8
Minor 5ss
25
-2.9
3.8
36.2
41.7
Minor BPS
62.5
0.39
1.9
80.29
35.2

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029