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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6083036_6083207_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6083036 - 6083207
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGATTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGTCTTGATT
Flanking Amino Acid:
HTPPDLPEGYEQRTTQQGQV
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78
0.63
0.9
71.7
37.9
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
72.3
0.78
1.3
86.06
34.4

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029