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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6083293_6085951_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6083293 - 6085951
Intron Length:
2659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
VSTWHDPRVPRDLSNINCEE
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029