Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6086103_6090278_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6086103 - 6090278

Intron Length:

4176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTA|GTATTAAAG

5'SS Class:

weak_major

3'SS Sequence:

GCAGCAGCAGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACTTAAA

U12 Branch Point Sequence:

ATCAACTTAAAG

Flanking Amino Acid:

DPRLSANLHLVVSLCQLPDE

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.12

1.1

52.6

Major BPS

0.47

69.9

32.6

Major PPT

49.4

-0

1.1

40.6

38.1

Minor 5ss

40.8

-1

2.8

50.3

41.3

Minor BPS

51.7

-0

1.8

57.22

43.6

Associated Gene:

Gene:

SMURF2

Ensembl Gene ID:

ENSAPLG00000009867

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010322

6065234 - 6098262

33029