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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6090444_6091583_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6090444 - 6091583
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTGTATTAACA
Flanking Amino Acid:
IEVSREEIFEESYRQVMKMR
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
72
0.49
1
66.5
43.2
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
61.8
0.37
1.7
72.91
38.8

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029