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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6096074_6097827_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6096074 - 6097827
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
CTTTTCTGGATT
Flanking Amino Acid:
VPLQGFKALQGAAGPRLFTI
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
77.6
0.62
0.9
73.4
41
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
63.4
0.5
1.5
78.87
37.8

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029