About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6097904_6098162_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6097904 - 6098162
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCCAAATAATT
Flanking Amino Acid:
STNNLPKAHTCFNRIDIPPY
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
46.5
-0.1
2
68.93
41.5

Associated Gene:

Gene:
SMURF2
Ensembl Gene ID:
ENSAPLG00000009867
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010322
6065234 - 6098262
33029