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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6107608_6109066_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6107608 - 6109066
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTGTCTTTACCT
Flanking Amino Acid:
GTVKPKKAAPMEVRDDDLLL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.6
0.67
0.8
74
30.7
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
66.2
0.59
1.7
79.01
43.8

Associated Gene:

Gene:
CEP95
Ensembl Gene ID:
ENSAPLG00000009428
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009876
6104186 - 6115091
10906