About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6111968_6112269_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6111968 - 6112269
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAGCA
Flanking Amino Acid:
PQSRHLPRKKRFENSTTDSL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.6
1.12
0.8
80.1
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.3
0.77
0.9
81.7
34.6
Minor 5ss
30.2
-2.3
3.8
41.6
45
Minor BPS
61.8
0.37
1.6
74.26
38.1

Associated Gene:

Gene:
CEP95
Ensembl Gene ID:
ENSAPLG00000009428
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009876
6104186 - 6115091
10906