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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6115097_6117028_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6115097 - 6117028
Intron Length:
1932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AGTTCTTTATAT
Flanking Amino Acid:
TAHSFSERGEGSMGFVHTDE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
76.1
0.59
1
80.1
32.3
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
60.5
0.41
1.7
76.53
39.8

Associated Gene:

Gene:
CEP95
Ensembl Gene ID:
ENSAPLG00000009428
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025756
6104186 - 6122960
18775