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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6127563_6127710_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6127563 - 6127710
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCAAA
U12 Branch Point Sequence:
TTTCCAGTAATG
Flanking Amino Acid:
EHPDVVRRTVQEVEQYRSSK
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.3
35.6
Major BPS
59.9
0.25
1.2
69
34.4
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
43.2
-0.7
2.4
52.2
38.7
Minor BPS
49.3
-0.1
2.3
66.07
41.8

Associated Gene:

Gene:
DDX5
Ensembl Gene ID:
ENSAPLG00000009071
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009489
6125923 - 6132448
6526