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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6128027_6128148_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6128027 - 6128148
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTTCCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCTTCCAAACA
Flanking Amino Acid:
AQTGSGKTLSYLLPAIVHIN
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
75.6
35.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
74
0.54
0.9
70.5
34
Minor 5ss
47.7
-0.2
2.8
71.6
38.3
Minor BPS
53.8
0.12
2
71.21
41.3

Associated Gene:

Gene:
DDX5
Ensembl Gene ID:
ENSAPLG00000009071
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009489
6125923 - 6132448
6526