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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6128215_6128662_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6128215 - 6128662
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATCTTACTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GGCATCTTACTT
Flanking Amino Acid:
PFLERGDGPICLVLAPTREL
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.8
0.67
0.9
70.5
39.6
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
49.2
0.02
1.7
61.44
42.7

Associated Gene:

Gene:
DDX5
Ensembl Gene ID:
ENSAPLG00000009071
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009489
6125923 - 6132448
6526