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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6137700_6137814_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6137700 - 6137814
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTAAAATTGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTAAAAT
Flanking Amino Acid:
LTKKKNSQRKVLKLHPCLAP
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.7
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
57.2
0.16
1.1
55.2
44.3
Minor 5ss
43.4
-0.7
2.9
58.6
45.9
Minor BPS
69.5
0.69
1.7
88.72
36.1

Associated Gene:

Gene:
POLG2
Ensembl Gene ID:
ENSAPLG00000009056
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009417
6135233 - 6139696
4464