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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6140570_6140879_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6140570 - 6140879
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAGCC
5'SS Class:
major
3'SS Sequence:
ATTCTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTCTTTTAACA
Flanking Amino Acid:
FSVSRREDEKEKRESPTIYS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
0.9
65.4
32.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.1
0.7
0.9
77.4
35
Minor 5ss
25.6
-2.8
3.2
33.4
42
Minor BPS
74.3
0.76
1.1
78.75
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009000
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009353
6139575 - 6145222
5648