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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6140940_6142025_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6140940 - 6142025
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTCG
5'SS Class:
major
3'SS Sequence:
ATCTTTAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTATCTTTAATA
Flanking Amino Acid:
SENYVTYTEIKPIQKRECAV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
67.8
38.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.8
0.58
1
70.2
38.7
Minor 5ss
42.4
-0.8
2.7
52.4
39.4
Minor BPS
82.2
1.01
0.9
84.02
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009000
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009353
6139575 - 6145222
5648