About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6142497_6143012_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6142497 - 6143012
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGG
5'SS Class:
major
3'SS Sequence:
TTATTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAATT
Flanking Amino Acid:
YSNSFNFILAEESCDSQPWI
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.3
46
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.3
0.73
1
80.8
36.6
Minor 5ss
44.9
-0.6
2.6
57.4
46.9
Minor BPS
69.6
0.69
1.6
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009000
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009353
6139575 - 6145222
5648