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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6143298_6143876_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6143298 - 6143876
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTTTTGTTT
Flanking Amino Acid:
YSTSLNFMLKEPLSKPGLHS
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009000
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009353
6139575 - 6145222
5648