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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6144162_6145056_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6144162 - 6145056
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GTGCAATCAACT
Flanking Amino Acid:
QIQNATADGREILSNPILTP
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
46.3
-0.2
2
65.52
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009000
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009353
6139575 - 6145222
5648